Myrna 1.2.0

AWS ID *

AWS Secret Key *

AWS Keypair Name

Look it up

Job name

Job type

Myrna
Just preprocess reads

Input URL *

Output URL *

Input type

Preprocessed reads
Manifest file

Truncate length

(If blank or 0, truncation is disabled)

Skip reads shorter than truncate length

Discard fraction

Quality encoding

Genes to report in detail

(If blank or 0, all alignments are discarded)

Genome/Annotation

Colorspace

Specify reference jar URL:

Bowtie options

Don't forget to specify -C or --color if index is colorspace.

Model family

Null permutations

(If blank or 0, permutation test is disabled)

Gene Intervals

Intersection of transcripts
Union of exons

Options

Pool technical replicates
Pool all replicates
For paired-end reads, use just one mate

Options

Keep cluster running after job finishes/aborts

# EC2 instances

Made with the help of

Please cite: Langmead B, Hansen K, Leek J. Cloud-scale RNA-sequencing differential expression analysis with Myrna. Genome Biology 11:R83.